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SpikeGraphormer: A high-performance graph transformer with spiking graph attention

  • Yundong Sun*
  • , Dongjie Zhu
  • , Yansong Wang
  • , Zhaoshuo Tian
  • , Ning Cao
  • , Gregory O'Hare
  • *Corresponding author for this work
  • Linyi University
  • School of Computer Science and Technology (School of Software), Harbin Institute of Technology Weihai
  • Harbin Institute of Technology
  • Hebei Gejun Science & Technology Company
  • Trinity College Dublin

Research output: Contribution to journalArticlepeer-review

Abstract

Recently, Graph Transformers have emerged as a promising solution to alleviate the limitations of Graph Neural Networks (GNNs) and enhance graph representation performance. Unfortunately, Graph Transformers are computationally expensive due to the quadratic complexity inherent in self-attention when applied over large-scale graphs, especially for node tasks. In contrast, Spiking Neural Networks (SNNs), with event-driven and binary spikes properties, can perform energy-efficient computation. In this work, we propose a novel insight into integrating SNNs with Graph Transformers and design a Spiking Graph Attention (SGA) module. The matrix multiplication is replaced by sparse addition and mask operations. The linear complexity enables all-pair node interactions on large-scale graphs with limited GPU memory. To our knowledge, our work is the first attempt to introduce SNNs into the attention of Graph Transformers. Furthermore, we design SpikeGraphormer, a dual-branch architecture, combining a sparse GNN branch with our SGA-driven Graph Transformer branch, which can simultaneously perform all-pair node interactions and capture local neighborhoods. SpikeGraphormer consistently outperforms existing state-of-the-art approaches across various datasets and makes substantial improvements in training time, inference time, and GPU memory cost (10 ∼ 20 × lower than vanilla self-attention). It also performs well in cross-domain applications (image and text classification). We release our code at SpikeGraphormer.

Original languageEnglish
Article number123828
JournalInformation Sciences
Volume755
DOIs
StatePublished - 5 Nov 2026
Externally publishedYes

Keywords

  • Computational complexity
  • Graph neural networks
  • Graph transformer
  • Large-scale graph representation
  • Spiking neural networks

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