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Revisiting Drug Recommendation From a Causal Perspective

  • Junjie Zhang
  • , Xuan Zang
  • , Hao Chen
  • , Xiaowei Yan
  • , Buzhou Tang*
  • *Corresponding author for this work
  • School of Computer Science and Technology, Harbin Institute of Technology
  • Peng Cheng Laboratory

Research output: Contribution to journalArticlepeer-review

Abstract

Drug recommendation that aims to provide a prescription for a patient is an essential task in healthcare. Drug molecular graphs provide valuable support for drug recommendation. Existing methods tend to overlook drugs' molecular graphs or use the core substructures of molecular graphs with a rule-based segmentation strategy. However, such methods have several limitations: (1) The rule-based segmentation strategy is inflexible and sub-optimal for extremely complex scenarios. (2) The core substructures derived only consider the drug's chemical characteristics and ignore the patient's health condition. (3) The spurious correlation brought by trivial substructures is disregarded. To address these limitations, we design a novel drug recommendation method from a causal perspective, where a conditional causal representation learner for drug recommendation is proposed. Specifically, we first separate the drug molecular representation into causal and spurious parts depending on various patients' health conditions. Then, we eliminate the spurious correlation caused by the spurious part with causal intervention. Extensive experiments on the MIMIC-III and MIMIC-IV datasets demonstrate that our approach achieves new state-of-the-art performance (e.g., 6.68% Jaccard improvements on MIMIC-III with p-value < 0.05).

Original languageEnglish
Pages (from-to)1525-1533
Number of pages9
JournalIEEE Journal of Biomedical and Health Informatics
Volume29
Issue number2
DOIs
StatePublished - 2025
Externally publishedYes

Keywords

  • Causal substructure
  • drug recommendation
  • electronic health records (EHRs)
  • molecular graphs

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