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MvG-NRLMF: Multi-view graph neighborhood regularized logistic matrix factorization for identifying drug–target interaction

  • Yu Zhang
  • , Qian Liao
  • , Prayag Tiwari
  • , Ying Chu
  • , Yu Wang
  • , Yi Ding
  • , Xianyi Zhao
  • , Jie Wan
  • , Yijie Ding
  • , Ke Han*
  • *Corresponding author for this work
  • Harbin University of Commerce
  • Halmstad University
  • University of Electronic Science and Technology of China

Research output: Contribution to journalArticlepeer-review

Abstract

Traditional methods for predicting drug–target interactions (DTIs) have significant room for improvement in terms of time period and monetary overhead. At present, machine learning-based approaches are commonly used in the drug discovery field. In this study, a multi-view graph neighborhood regularized logical matrix factorization (MvG-NRLMF) model was proposed to predict unknown DTIs. Multiple similarity matrices (kernels) were constructed from the space of drugs and targets, the corresponding Laplacian matrices were generated, and these were fused. Finally, the MvG-NRLMF model was adjusted using an alternating gradient ascent procedure for training. On the four benchmark datasets, our method was competitive, and on some datasets, our method even outperformed existing models.

Original languageEnglish
Pages (from-to)844-853
Number of pages10
JournalFuture Generation Computer Systems
Volume160
DOIs
StatePublished - Nov 2024

Keywords

  • Bipartite network
  • Drug–target interactions
  • Laplacian matrices
  • Multi-view

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