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Learning to Describe for Predicting Zero-shot Drug-Drug Interactions

  • Fangqi Zhu
  • , Yongqi Zhang*
  • , Lei Chen
  • , Bing Qin
  • , Ruifeng Xu*
  • *Corresponding author for this work
  • Harbin Institute of Technology Shenzhen
  • Guangdong Provincial Key Laboratory of Novel Security Intelligence Technologies
  • 4Paradigm Inc.
  • Hong Kong University of Science and Technology
  • Peng Cheng Laboratory

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

Adverse drug-drug interactions (DDIs) can compromise the effectiveness of concurrent drug administration, posing a significant challenge in healthcare. As the development of new drugs continues, the potential for unknown adverse effects resulting from DDIs becomes a growing concern. Traditional computational methods for DDI prediction may fail to capture interactions for new drugs due to the lack of knowledge. In this paper, we introduce a new problem setup as zero-shot DDI prediction that deals with the case of new drugs. Leveraging textual information from online databases like DrugBank and PubChem, we propose an innovative approach TextDDI with a language model-based DDI predictor and a reinforcement learning (RL)-based information selector, enabling the selection of concise and pertinent text for accurate DDI prediction on new drugs. Empirical results show the benefits of the proposed approach on several settings including zero-shot and few-shot DDI prediction, and the selected texts are semantically relevant. Our code and data are available at https://github.com/zhufq00/DDIs-Prediction.

Original languageEnglish
Title of host publicationEMNLP 2023 - 2023 Conference on Empirical Methods in Natural Language Processing, Proceedings
EditorsHouda Bouamor, Juan Pino, Kalika Bali
PublisherAssociation for Computational Linguistics (ACL)
Pages14855-14870
Number of pages16
ISBN (Electronic)9798891760608
DOIs
StatePublished - 2023
Externally publishedYes
Event2023 Conference on Empirical Methods in Natural Language Processing, EMNLP 2023 - Hybrid, Singapore, Singapore
Duration: 6 Dec 202310 Dec 2023

Publication series

NameEMNLP 2023 - 2023 Conference on Empirical Methods in Natural Language Processing, Proceedings

Conference

Conference2023 Conference on Empirical Methods in Natural Language Processing, EMNLP 2023
Country/TerritorySingapore
CityHybrid, Singapore
Period6/12/2310/12/23

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