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DFFNDDS: prediction of synergistic drug combinations with dual feature fusion networks

  • Mengdie Xu
  • , Xinwei Zhao
  • , Jingyu Wang
  • , Wei Feng
  • , Naifeng Wen
  • , Chunyu Wang
  • , Junjie Wang
  • , Yun Liu*
  • , Lingling Zhao*
  • *Corresponding author for this work
  • Nanjing Medical University
  • Dalian Minzu University
  • Faculty of Computing, Harbin Institute of Technology
  • First Affiliated Hospital of Nanjing Medical University

Research output: Contribution to journalArticlepeer-review

Abstract

Drug combination therapies are promising clinical treatments for curing patients. However, efficiently identifying valid drug combinations remains challenging because the number of available drugs has increased rapidly. In this study, we proposed a deep learning model called the Dual Feature Fusion Network for Drug–Drug Synergy prediction (DFFNDDS) that utilizes a fine-tuned pretrained language model and dual feature fusion mechanism to predict synergistic drug combinations. The dual feature fusion mechanism fuses the drug features and cell line features at the bit-wise level and the vector-wise level. We demonstrated that DFFNDDS outperforms competitive methods and can serve as a reliable tool for identifying synergistic drug combinations.

Original languageEnglish
Article number33
JournalJournal of Cheminformatics
Volume15
Issue number1
DOIs
StatePublished - Dec 2023
Externally publishedYes

Keywords

  • Deep learning
  • Drug combination
  • Dual-feature fusion
  • Synergistic effect

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