Colored Petri nets for multiscale systems biology - Current modeling and analysis capabilities in snoopy

Fei Liu; Monika Heiner; Ming Yang

doi:10.1109/ISB.2013.6623788

Colored Petri nets for multiscale systems biology - Current modeling and analysis capabilities in snoopy

Fei Liu
, Monika Heiner
, Ming Yang

School of Astronautics

Harbin Institute of Technology
Brandenburg University of Technology

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

3 Scopus citations

Abstract

Systems biology has introduced a number of multiscale challenges, which, however, can be tackled by colored Petri nets, but not by traditional approaches like ordinary differential equations or Petri nets. In this paper, after a brief covering of multiscale challenges of systems biology, we report the modeling and analysis capabilities of colored Petri nets, which Snoopy by now offers, and describe how these capabilities are used to address those multiscale challenges. In doing so, we aim to attract more researchers to use the powerful capabilities of colored Petri nets to model and analyze multiscale biological systems.

Original language	English
Title of host publication	2013 7th International Conference on Systems Biology, ISB 2013
Publisher	IEEE Computer Society
Pages	24-30
Number of pages	7
ISBN (Print)	9781479913893
DOIs	https://doi.org/10.1109/ISB.2013.6623788
State	Published - 2013
Event	2013 7th International Conference on Systems Biology, ISB 2013 - Huangshan, China Duration: 23 Aug 2013 → 25 Aug 2013

Conference

Conference	2013 7th International Conference on Systems Biology, ISB 2013
Country/Territory	China
City	Huangshan
Period	23/08/13 → 25/08/13

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10.1109/ISB.2013.6623788

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title = "Colored Petri nets for multiscale systems biology - Current modeling and analysis capabilities in snoopy",

abstract = "Systems biology has introduced a number of multiscale challenges, which, however, can be tackled by colored Petri nets, but not by traditional approaches like ordinary differential equations or Petri nets. In this paper, after a brief covering of multiscale challenges of systems biology, we report the modeling and analysis capabilities of colored Petri nets, which Snoopy by now offers, and describe how these capabilities are used to address those multiscale challenges. In doing so, we aim to attract more researchers to use the powerful capabilities of colored Petri nets to model and analyze multiscale biological systems.",

author = "Fei Liu and Monika Heiner and Ming Yang",

year = "2013",

doi = "10.1109/ISB.2013.6623788",

language = "英语",

isbn = "9781479913893",

pages = "24--30",

booktitle = "2013 7th International Conference on Systems Biology, ISB 2013",

publisher = "IEEE Computer Society",

address = "美国",

note = "2013 7th International Conference on Systems Biology, ISB 2013 ; Conference date: 23-08-2013 Through 25-08-2013",

}

Liu, F, Heiner, M & Yang, M 2013, Colored Petri nets for multiscale systems biology - Current modeling and analysis capabilities in snoopy. in 2013 7th International Conference on Systems Biology, ISB 2013., 6623788, IEEE Computer Society, pp. 24-30, 2013 7th International Conference on Systems Biology, ISB 2013, Huangshan, China, 23/08/13. https://doi.org/10.1109/ISB.2013.6623788

TY - GEN

T1 - Colored Petri nets for multiscale systems biology - Current modeling and analysis capabilities in snoopy

AU - Liu, Fei

AU - Heiner, Monika

AU - Yang, Ming

PY - 2013

Y1 - 2013

N2 - Systems biology has introduced a number of multiscale challenges, which, however, can be tackled by colored Petri nets, but not by traditional approaches like ordinary differential equations or Petri nets. In this paper, after a brief covering of multiscale challenges of systems biology, we report the modeling and analysis capabilities of colored Petri nets, which Snoopy by now offers, and describe how these capabilities are used to address those multiscale challenges. In doing so, we aim to attract more researchers to use the powerful capabilities of colored Petri nets to model and analyze multiscale biological systems.

AB - Systems biology has introduced a number of multiscale challenges, which, however, can be tackled by colored Petri nets, but not by traditional approaches like ordinary differential equations or Petri nets. In this paper, after a brief covering of multiscale challenges of systems biology, we report the modeling and analysis capabilities of colored Petri nets, which Snoopy by now offers, and describe how these capabilities are used to address those multiscale challenges. In doing so, we aim to attract more researchers to use the powerful capabilities of colored Petri nets to model and analyze multiscale biological systems.

UR - https://www.scopus.com/pages/publications/84893478092

U2 - 10.1109/ISB.2013.6623788

DO - 10.1109/ISB.2013.6623788

M3 - 会议稿件

AN - SCOPUS:84893478092

SN - 9781479913893

SP - 24

EP - 30

BT - 2013 7th International Conference on Systems Biology, ISB 2013

PB - IEEE Computer Society

T2 - 2013 7th International Conference on Systems Biology, ISB 2013

Y2 - 23 August 2013 through 25 August 2013

ER -

Colored Petri nets for multiscale systems biology - Current modeling and analysis capabilities in snoopy

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