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BrainCognizer: Brain Decoding with Human Visual Cognition Simulation for fMRI-to-Image Reconstruction

  • Guoying Sun
  • , Weiyu Guo
  • , Tong Shao
  • , Yang Yang
  • , Haijin Zeng
  • , Jie Liu
  • , Jingyong Su*
  • *Corresponding author for this work
  • Harbin Institute of Technology
  • Hong Kong University of Science and Technology
  • Harvard University

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

Brain decoding is a key neuroscience field that reconstructs the visual stimuli from brain activity with fMRI, which helps illuminate how the brain represents the world. fMRI-to-image reconstruction has achieved impressive progress by leveraging diffusion models. However, brain signals infused with prior knowledge and associations exhibit a significant information asymmetry when compared to raw visual features, still posing challenges for decoding fMRI representations under the supervision of images. Consequently, the reconstructed images often lack fine-grained visual fidelity, such as missing attributes and distorted spatial relationships. To tackle this challenge, we propose BrainCognizer, a novel brain decoding model inspired by human visual cognition, which explores multilevel semantics and correlations without fine-tuning of generative models. Specifically, BrainCognizer introduces two modules: the Cognitive Integration Module which incorporates prior human knowledge to extract hierarchical region semantics; and the Cognitive Correlation Module which captures contextual semantic relationships across regions. Incorporating these two modules enhances intra-region semantic consistency and maintains interregion contextual associations, thereby facilitating fine-grained brain decoding. Moreover, we quantitatively interpret our components from a neuroscience perspective and analyze the associations between different visual patterns and brain functions. Extensive quantitative and qualitative experiments demonstrate that BrainCognizer outperforms state-of-the-art approaches on multiple evaluation metrics. Our code is released publicly at https://github.com/Grace160/BrainCognizer.

Original languageEnglish
Title of host publicationProceedings - 2025 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2025
EditorsJuan Liu, Jingshan Huang, Xiaowo Wang, Fa Zhang, Xiufen Zou, Tian Tian, Xiaohua Hu, Bin Hu, Yi Xiong
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages2831-2838
Number of pages8
ISBN (Electronic)9798331515577
DOIs
StatePublished - 2025
Externally publishedYes
Event2025 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2025 - Wuhan, China
Duration: 15 Dec 202518 Dec 2025

Publication series

NameProceedings - 2025 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2025

Conference

Conference2025 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2025
Country/TerritoryChina
CityWuhan
Period15/12/2518/12/25

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being

Keywords

  • Brain decoding
  • Human visual cognition
  • Latent diffusion model
  • fMRI-to-Image reconstruction

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