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An implementation for mapping SBML to BioSPI

  • Zhupeng Dong*
  • , Xiaoju Dong
  • , Xian Xu
  • , Yuxi Fu
  • , Zhizhou Zhang
  • , Lin He
  • *Corresponding author for this work
  • Shanghai Jiao Tong University

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

The Systems Biology Markup Language(SBML) is an XMLbased format for representing models of Systems Biology. BioSPI is a formal model to simulate biological systems, which is evolved from process calculi. Based on the previous research on modeling Systems Biology using process algebra, we propose a method to map SBML to BioSPI. The motivation of the work is to make full use of BioSPI to analyze biological systems described by SBML, In this paper, the mapping rules are presented and an example is given to show the simulation results.

Original languageEnglish
Title of host publicationFuzzy Systems and Knowledge Discovery - Second International Conference, FSKD 2005, Proceedings
PublisherSpringer Verlag
Pages1128-1131
Number of pages4
ISBN (Print)9783540283317
StatePublished - 2006
Externally publishedYes
Event2nd International Conference on Fuzzy Systems and Knowledge Discovery, FSKD 2005 - Changsa, China
Duration: 27 Aug 200529 Aug 2005

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume3614 LNAI
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference2nd International Conference on Fuzzy Systems and Knowledge Discovery, FSKD 2005
Country/TerritoryChina
CityChangsa
Period27/08/0529/08/05

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