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A new simulation algorithm for simulating biochemistry reaction using agent

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

Biochemical reaction network simulation is the core task in the new virtual cell simulation technology, because it carries out a lot of complex biochemical reactions. A new general algorithm is proposed to simulate the biochemical reactions in virtual cell using multi-agent. The algorithm is based on a deterministic algorithm for biochemical reactions in virtual cell. It overcomes the shortcoming of deterministic algorithm which can only be used for the same type's reactions, and the deterministic algorithm can not expand to other network of biochemical reactions. The algorithm completed the design and implementation in Cougaar development platform. Test results are mostly consistent with biological experiments after the system is used to simulate the heat shock response reaction.

Original languageEnglish
Title of host publicationProceedings - 2010 3rd International Conference on Biomedical Engineering and Informatics, BMEI 2010
Pages1119-1123
Number of pages5
DOIs
StatePublished - 2010
Externally publishedYes
Event3rd International Conference on BioMedical Engineering and Informatics, BMEI 2010 - Yantai, China
Duration: 16 Oct 201018 Oct 2010

Publication series

NameProceedings - 2010 3rd International Conference on Biomedical Engineering and Informatics, BMEI 2010
Volume3

Conference

Conference3rd International Conference on BioMedical Engineering and Informatics, BMEI 2010
Country/TerritoryChina
CityYantai
Period16/10/1018/10/10

Keywords

  • Agent
  • Biochemical reaction
  • Computer simulation

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